MLOC_3540 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.385343.363644.774563.4873
LEAShoots from the seedlings (10 cm shoot stage)34.784732.35626.873334.2626
INF1Young developing inflorescences (5mm)64.863358.0346.810663.7607
INF2Developing inflorescences (1-1.5 cm)56.138860.992951.743890.6113
ROORoots from the seedlings (10 cm shoot stage)13.254234.764320.097665.7826
NODDeveloping tillers at six leaf stage, 3rd internode11.87599.5521310.164945.2945
CAR5Developing grain, bracts removed (5 DPA)73.226371.232762.473101.924
CAR15Developing grain, bracts removed (15 DPA)19.013718.368715.080756.3862



CDS Structure of MLOC_3540






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3540.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3540.1CUST_4970_PI427708083AvailableAvailablecontig_131542 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g51500.1 -1 2e-23 103 113/183 (62%) 13105.m05555 protein eukaryotic translation initiation factor 5B, putative, expressed
TAIR PP10None-----