MLOC_3539 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 49.4334 | 64.1751 | 62.8405 | 67.133 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 48.3867 | 50.1123 | 46.7504 | 46.5427 |
| INF1 | Young developing inflorescences (5mm) | 90.3516 | 82.8682 | 72.2901 | 72.8301 |
| INF2 | Developing inflorescences (1-1.5 cm) | 73.2988 | 84.8919 | 79.0877 | 93.489 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 29.3321 | 55.1736 | 39.1488 | 71.6986 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 25.1199 | 27.0212 | 28.1495 | 101.676 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 101.46 | 95.5561 | 99.844 | 104.98 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 32.4347 | 31.5128 | 28.8842 | 73.507 |
CDS Structure of MLOC_3539
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_3539.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g51500.1 |
-1 |
0.0 |
1209 |
687/804 (85%) |
13105.m05555 protein eukaryotic translation initiation factor 5B, putative, expressed |
| TAIR PP10 |
AT1G76810.1 |
-1 |
0.0 |
967 |
478/592 (81%) |
eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28831366-28836310 REVERSE LENGTH=1294 |
