MLOC_35306 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.3659412.77436.0696410.4184
LEAShoots from the seedlings (10 cm shoot stage)4.574347.020054.982494.80987
INF1Young developing inflorescences (5mm)8.795733.17279.173386.91734
INF2Developing inflorescences (1-1.5 cm)4.737127.082786.780888.50452
ROORoots from the seedlings (10 cm shoot stage)11.2710.169120.354815.0003
NODDeveloping tillers at six leaf stage, 3rd internode15.21135.052899.1551217.1648
CAR5Developing grain, bracts removed (5 DPA)13.89099.1601310.972413.079
CAR15Developing grain, bracts removed (15 DPA)2.794742.965553.768658.82377



CDS Structure of MLOC_35306






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_35306.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_35306.1CUST_4955_PI427708083AvailableAvailablecontig_2472575 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g40360.1 +1 3e-29 110 53/64 (83%) 13106.m04195 protein OsFBL30 - F-box domain and LRR containing protein, expressed
TAIR PP10 AT5G25350.1 +1 2e-15 71 33/61 (54%) | Symbols: EBF2 | EIN3-binding F box protein 2 | chr5:8794842-8796882 REVERSE LENGTH=623