MLOC_35155 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains107.28377.898563.964681.9348
LEAShoots from the seedlings (10 cm shoot stage)41.29244.178287.0817113.7548
INF1Young developing inflorescences (5mm)182.593183.577187.532169.973
INF2Developing inflorescences (1-1.5 cm)157.603243.436201.681250.573
ROORoots from the seedlings (10 cm shoot stage)48.443756.160662.70863.0895
NODDeveloping tillers at six leaf stage, 3rd internode3.987893.960915.1973610.2672
CAR5Developing grain, bracts removed (5 DPA)67.636678.327153.628573.265
CAR15Developing grain, bracts removed (15 DPA)3.254511.522472.971586.57552



CDS Structure of MLOC_35155






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_35155.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_35155.1CUST_11254_PI427708080AvailableAvailablecontig_245923 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g34510.1 +1 6e-51 166 102/112 (91%) 13112.m03522 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT1G54690.1 +1 6e-49 160 99/112 (88%) | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma histone variant H2AX | chr1:20414607-20415206 REVERSE LENGTH=142