MLOC_35029 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains220.789150.468153.263159.977
LEAShoots from the seedlings (10 cm shoot stage)87.039745.639970.85352.6852
INF1Young developing inflorescences (5mm)125.091125.698117.101103.706
INF2Developing inflorescences (1-1.5 cm)72.692585.927288.693287.3074
ROORoots from the seedlings (10 cm shoot stage)171.682152.608140.363159.601
NODDeveloping tillers at six leaf stage, 3rd internode137.281108.20555.2954242.508
CAR5Developing grain, bracts removed (5 DPA)170.295181.89162.09161.809
CAR15Developing grain, bracts removed (15 DPA)60.220757.847151.5142134.371



CDS Structure of MLOC_35029






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_35029.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_35029.1CUST_11241_PI427708080AvailableAvailablecontig_245327 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g08180.1 -1 2e-29 108 68/69 (99%) 13102.m00943 protein protein transport protein SEC61 subunit gamma, putative, expressed
TAIR PP10 AT5G50460.1 -1 2e-28 104 63/68 (93%) secE/sec61-gamma protein transport protein | chr5:20552168-20552509 REVERSE LENGTH=69