MLOC_35013 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.472722.249342.616732.68189
LEAShoots from the seedlings (10 cm shoot stage)1.288360.9640280.3854190.764597
INF1Young developing inflorescences (5mm)0.0366876000.0329929
INF2Developing inflorescences (1-1.5 cm)0.019641300.02357190.0438698
ROORoots from the seedlings (10 cm shoot stage)8.369997.177156.937759.4304
NODDeveloping tillers at six leaf stage, 3rd internode2.67793.116159.3669114.8256
CAR5Developing grain, bracts removed (5 DPA)0.3972141.284810.7853281.09347
CAR15Developing grain, bracts removed (15 DPA)5.632485.100754.4382714.212



CDS Structure of MLOC_35013






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_35013.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373625NoneNoneNoneNone
MLOC_35013.1CUST_2231_PI427708080AvailableAvailablecontig_245286 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g63900.1 +2 6e-153 447 243/369 (66%) 13103.m07093 protein 1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed
TAIR PP10 AT1G17020.1 +2 3e-86 274 161/363 (44%) | Symbols: SRG1, ATSRG1 | senescence-related gene 1 | chr1:5820258-5821741 FORWARD LENGTH=358