MLOC_34992 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4762990.6998310.5453780.633465
LEAShoots from the seedlings (10 cm shoot stage)3.2686.843679.122255.22951
INF1Young developing inflorescences (5mm)1.461481.511711.598931.30234
INF2Developing inflorescences (1-1.5 cm)1.259191.567991.153471.51383
ROORoots from the seedlings (10 cm shoot stage)0.5236150.3359210.6690890.461219
NODDeveloping tillers at six leaf stage, 3rd internode2.381021.730672.76375.27391
CAR5Developing grain, bracts removed (5 DPA)1.754712.356851.895441.9971
CAR15Developing grain, bracts removed (15 DPA)1.772442.266821.465574.64246



CDS Structure of MLOC_34992






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34992.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366990NoneNoneNoneNone
MLOC_34992.1CUST_2230_PI427708080AvailableAvailablecontig_245198 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g35860.1 -3 2e-109 342 185/218 (85%) 13109.m03518 protein ras-related protein, putative, expressed
TAIR PP10 AT1G01200.1 -3 2e-79 260 133/180 (74%) | Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase homolog A3 | chr1:86715-88145 REVERSE LENGTH=237