MLOC_3499 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.306190.9883321.035751.19305
LEAShoots from the seedlings (10 cm shoot stage)1.094511.296441.633621.20075
INF1Young developing inflorescences (5mm)1.422721.411591.53461.29157
INF2Developing inflorescences (1-1.5 cm)1.047291.171680.9979191.23371
ROORoots from the seedlings (10 cm shoot stage)0.6410910.8935561.069431.15117
NODDeveloping tillers at six leaf stage, 3rd internode0.7185170.7998311.173132.74828
CAR5Developing grain, bracts removed (5 DPA)1.512161.633372.240181.82354
CAR15Developing grain, bracts removed (15 DPA)0.5577740.6105190.6088191.45788



CDS Structure of MLOC_3499






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3499.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3499.1CUST_11236_PI427708080AvailableAvailablecontig_13124 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g39050.1 +3 0.0 635 327/410 (80%) 13108.m04157 protein pentatricopeptide, putative, expressed
TAIR PP10 AT1G80150.1 +3 9e-131 395 189/356 (53%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:30148738-30149931 FORWARD LENGTH=397