MLOC_34862 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.153281.08811.923121.27548
LEAShoots from the seedlings (10 cm shoot stage)4.761721.830783.965143.19244
INF1Young developing inflorescences (5mm)1.340241.42291.224611.08758
INF2Developing inflorescences (1-1.5 cm)1.189540.7059521.019291.05921
ROORoots from the seedlings (10 cm shoot stage)00.1911740.6291880.367236
NODDeveloping tillers at six leaf stage, 3rd internode0.5103890.2351330.9029621.23603
CAR5Developing grain, bracts removed (5 DPA)2.436243.157093.114862.91218
CAR15Developing grain, bracts removed (15 DPA)0.8061210.90670.8188561.97932



CDS Structure of MLOC_34862






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34862.9
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248725.1NoneNoneNoneNone
MLOC_34862.9CUST_2223_PI427708080AvailableAvailablecontig_244797 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g34000.1 +2 3e-73 229 127/213 (60%) 13109.m03407 protein expressed protein
TAIR PP10 AT2G30695.2 +2 6e-31 117 71/158 (45%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13079269-13081095 REVERSE LENGTH=199