- Predicted Gene MLOC_34862
MLOC_34862 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_34862_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 1.15328 | 1.0881 | 1.92312 | 1.27548 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.76172 | 1.83078 | 3.96514 | 3.19244 |
INF1 | Young developing inflorescences (5mm) | 1.34024 | 1.4229 | 1.22461 | 1.08758 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.18954 | 0.705952 | 1.01929 | 1.05921 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0.191174 | 0.629188 | 0.367236 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.510389 | 0.235133 | 0.902962 | 1.23603 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.43624 | 3.15709 | 3.11486 | 2.91218 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.806121 | 0.9067 | 0.818856 | 1.97932 |
CDS Structure of MLOC_34862
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_34862.9
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os09g34000.1 |
+2 |
3e-73 |
229 |
127/213 (60%) |
13109.m03407 protein expressed protein |
TAIR PP10 |
AT2G30695.2 |
+2 |
6e-31 |
117 |
71/158 (45%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13079269-13081095 REVERSE LENGTH=199 |