MLOC_34809 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains277.611201.825228.026232.696
LEAShoots from the seedlings (10 cm shoot stage)110.912213.657172.437137.185
INF1Young developing inflorescences (5mm)18.20723.353324.943519.4785
INF2Developing inflorescences (1-1.5 cm)15.525518.010619.708120.0527
ROORoots from the seedlings (10 cm shoot stage)285.451230.593190.975279.26
NODDeveloping tillers at six leaf stage, 3rd internode108.946138.768105.581407.766
CAR5Developing grain, bracts removed (5 DPA)20.194724.418122.447823.0211
CAR15Developing grain, bracts removed (15 DPA)8.11968.542385.6156719.2054



CDS Structure of MLOC_34809






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34809.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356836NoneNoneNoneNone
MLOC_34809.1CUST_2212_PI427708080AvailableAvailablecontig_244641 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g27030.2 +3 0.0 578 287/328 (88%) 13109.m02621 protein oryzain gamma chain precursor, putative, expressed
TAIR PP10 AT5G60360.1 +3 3e-163 474 239/328 (73%) | Symbols: SAG2, AALP, ALP | aleurain-like protease | chr5:24280044-24282152 FORWARD LENGTH=358