- Predicted Gene MLOC_34756
MLOC_34756 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 11.7661 | 16.2207 | 15.2443 | 14.4529 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 109.858 | 221.546 | 96.6933 | 118.004 |
| INF1 | Young developing inflorescences (5mm) | 11.6063 | 14.1066 | 11.0772 | 10.0873 |
| INF2 | Developing inflorescences (1-1.5 cm) | 9.1999 | 10.3403 | 9.77602 | 10.3035 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 15.7087 | 39.0109 | 22.982 | 40.7127 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 354.617 | 195.394 | 168.393 | 655.301 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 43.0879 | 36.4796 | 41.8081 | 37.4222 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 9.62663 | 9.83003 | 11.7472 | 21.9316 |
CDS Structure of MLOC_34756
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_34756.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os06g33710.3 |
+2 |
0.0 |
644 |
328/387 (85%) |
13106.m03480 protein spermidine synthase, putative, expressed |
| TAIR PP10 |
AT5G53120.5 |
+2 |
3e-169 |
492 |
251/354 (71%) |
| Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359 |
