MLOC_34709 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.193012.2922.486782.51642
LEAShoots from the seedlings (10 cm shoot stage)0.1672820.048303600.0961493
INF1Young developing inflorescences (5mm)0.021158000.0194192
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)33.561919.519421.781626.5103
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_34709






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34709.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_34709.1CUST_11206_PI427708080AvailableAvailablecontig_244431 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g08380.1 +1 3e-152 444 254/312 (81%) 13111.m00882 protein 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed
TAIR PP10 AT1G77330.1 +1 5e-103 317 192/317 (61%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:29063215-29064447 REVERSE LENGTH=307