MLOC_34663 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.681712.946613.296416.0003
LEAShoots from the seedlings (10 cm shoot stage)12.23649.718667.6222710.2696
INF1Young developing inflorescences (5mm)29.550431.294236.557231.631
INF2Developing inflorescences (1-1.5 cm)45.30533.193539.531248.6593
ROORoots from the seedlings (10 cm shoot stage)9.2609210.17112.712517.0017
NODDeveloping tillers at six leaf stage, 3rd internode11.136214.634823.284272.0691
CAR5Developing grain, bracts removed (5 DPA)12.944414.397815.434716.7859
CAR15Developing grain, bracts removed (15 DPA)9.077867.523048.0391321.268



CDS Structure of MLOC_34663






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34663.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369975NoneNoneNoneNone
MLOC_34663.1CUST_2197_PI427708080AvailableAvailablecontig_244340 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g22500.1 +2 6e-88 271 174/257 (68%) 13101.m02386 protein craniofacial development protein 1, putative, expressed
TAIR PP10 AT5G30490.2 +2 4e-45 158 109/238 (46%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr5:11612199-11614271 FORWARD LENGTH=236