MLOC_34651 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains35.423538.771337.063242.4268
LEAShoots from the seedlings (10 cm shoot stage)27.541125.532825.451223.7971
INF1Young developing inflorescences (5mm)63.017966.378357.396858.4744
INF2Developing inflorescences (1-1.5 cm)46.581844.682546.009454.143
ROORoots from the seedlings (10 cm shoot stage)26.070339.433540.493451.5274
NODDeveloping tillers at six leaf stage, 3rd internode1.736962.033075.343348.5962
CAR5Developing grain, bracts removed (5 DPA)28.428832.188927.268832.1922
CAR15Developing grain, bracts removed (15 DPA)5.958046.441455.327315.9512



CDS Structure of MLOC_34651






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34651.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369751NoneNoneNoneNone
MLOC_34651.2CUST_2195_PI427708080AvailableAvailablecontig_244319 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g18830.1 -2 9e-147 423 228/284 (80%) 13102.m02111 protein ribosome biogenesis protein NEP1, putative, expressed
TAIR PP10 AT3G57000.1 -2 2e-93 286 144/223 (65%) nucleolar essential protein-related | chr3:21092610-21094109 FORWARD LENGTH=298