MLOC_34572 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3982170.7559650.6198660.636397
LEAShoots from the seedlings (10 cm shoot stage)0.2700720.6161130.1031350.27663
INF1Young developing inflorescences (5mm)1.312511.550591.306311.18439
INF2Developing inflorescences (1-1.5 cm)1.473291.252291.197431.4469
ROORoots from the seedlings (10 cm shoot stage)0.4707980.4643590.3539280.558131
NODDeveloping tillers at six leaf stage, 3rd internode00.005374920.09847060.108211
CAR5Developing grain, bracts removed (5 DPA)1.133791.194691.221231.14621
CAR15Developing grain, bracts removed (15 DPA)0.1483720.2709980.09289330.429699



CDS Structure of MLOC_34572






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34572.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_34572.1CUST_11178_PI427708080AvailableAvailablecontig_244188 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g06150.1 -2 0.0 769 397/493 (81%) 13105.m00654 protein vegetative storage protein, putative, expressed
TAIR PP10 AT4G18750.1 -2 6e-93 312 164/480 (34%) | Symbols: DOT4 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10304850-10307465 FORWARD LENGTH=871