MLOC_34557 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.835961.65452.555749.3299
LEAShoots from the seedlings (10 cm shoot stage)49.065455.819539.227339.471
INF1Young developing inflorescences (5mm)52.135453.642755.091243.1794
INF2Developing inflorescences (1-1.5 cm)53.762651.944148.47554.0669
ROORoots from the seedlings (10 cm shoot stage)29.019462.779843.002863.4039
NODDeveloping tillers at six leaf stage, 3rd internode24.850129.177127.709389.7435
CAR5Developing grain, bracts removed (5 DPA)54.869650.397351.853347.9662
CAR15Developing grain, bracts removed (15 DPA)6.783216.629797.1565515.0466



CDS Structure of MLOC_34557






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34557.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372318NoneNoneNoneNone
MLOC_34557.1CUST_2186_PI427708080AvailableAvailablecontig_244161 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g39660.1 -2 0.0 1797 921/1017 (91%) 13112.m04120 protein calcium-transporting ATPase, plasma membrane-type, putative, expressed
TAIR PP10 AT1G27770.1 -2 0.0 1505 771/1016 (76%) | Symbols: ACA1, PEA1 | autoinhibited Ca2+-ATPase 1 | chr1:9671912-9676010 REVERSE LENGTH=1020