MLOC_34538 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06593950.1059320.06901740.0939032
LEAShoots from the seedlings (10 cm shoot stage)1.12921.678921.898791.17805
INF1Young developing inflorescences (5mm)0.8466940.6595590.8317850.694456
INF2Developing inflorescences (1-1.5 cm)0.6811270.7914070.4899330.777262
ROORoots from the seedlings (10 cm shoot stage)0.3815930.453890.2671290.485204
NODDeveloping tillers at six leaf stage, 3rd internode0.4938160.7889020.5668861.65542
CAR5Developing grain, bracts removed (5 DPA)0.4133350.3455790.4341790.408255
CAR15Developing grain, bracts removed (15 DPA)0.1321920.1190270.09463670.330209



CDS Structure of MLOC_34538






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34538.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK377069NoneNoneNoneNone
MLOC_34538.1CUST_2182_PI427708080AvailableAvailablecontig_244128 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g10470.1 +3 1e-25 102 57/100 (57%) 13101.m01132 protein RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed
TAIR PP10 AT4G15800.1 +3 2e-14 69 40/84 (48%) | Symbols: RALFL33 | ralf-like 33 | chr4:8984915-8985265 FORWARD LENGTH=116