MLOC_34508 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains451.135382.342352.547423.567
LEAShoots from the seedlings (10 cm shoot stage)244.84196.3885103.139136.323
INF1Young developing inflorescences (5mm)522.821480.769533.07452.559
INF2Developing inflorescences (1-1.5 cm)342.158283.595322.566359.011
ROORoots from the seedlings (10 cm shoot stage)186.068278.23316.878360.57
NODDeveloping tillers at six leaf stage, 3rd internode30.631223.278866.2702111.555
CAR5Developing grain, bracts removed (5 DPA)151.772149.152144.859156.223
CAR15Developing grain, bracts removed (15 DPA)81.041381.690875.6957188.524



CDS Structure of MLOC_34508






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34508.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370613NoneNoneNoneNone
MLOC_34508.1CUST_17990_PI427708080AvailableAvailablecontig_244067 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g44450.2 -1 2e-124 360 196/216 (91%) 13108.m04827 protein L1P family of ribosomal proteins domain containing protein, expressed
TAIR PP10 AT2G27530.2 -1 1e-117 342 186/216 (86%) | Symbols: PGY1 | Ribosomal protein L1p/L10e family | chr2:11763443-11764570 REVERSE LENGTH=216