- Predicted Gene MLOC_34483
MLOC_34483 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 24.4217 | 18.5514 | 18.3629 | 21.5362 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 13.7184 | 17.1805 | 20.756 | 15.6312 |
INF1 | Young developing inflorescences (5mm) | 27.0755 | 31.5518 | 31.8486 | 28.5495 |
INF2 | Developing inflorescences (1-1.5 cm) | 22.7065 | 25.5192 | 24.8286 | 29.374 |
ROO | Roots from the seedlings (10 cm shoot stage) | 32.6462 | 25.4772 | 25.4719 | 33.932 |
NOD | Developing tillers at six leaf stage, 3rd internode | 13.2432 | 20.7239 | 43.3941 | 86.8963 |
CAR5 | Developing grain, bracts removed (5 DPA) | 27.4896 | 33.8732 | 25.162 | 32.1236 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.80602 | 5.20442 | 3.96806 | 13.2893 |
CDS Structure of MLOC_34483
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_34483.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g05260.1 |
-3 |
5e-106 |
313 |
156/210 (74%) |
13103.m00551 protein ankyrin repeat domain containing protein, expressed |
TAIR PP10 |
AT3G09890.1 |
-3 |
3e-72 |
226 |
111/197 (56%) |
Ankyrin repeat family protein | chr3:3032678-3034158 FORWARD LENGTH=206 |