MLOC_3448 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.95914.661215.362612.7126
LEAShoots from the seedlings (10 cm shoot stage)21.793122.687124.999617.8218
INF1Young developing inflorescences (5mm)17.028218.490324.545813.812
INF2Developing inflorescences (1-1.5 cm)23.427921.42623.521421.536
ROORoots from the seedlings (10 cm shoot stage)16.377524.852718.406824.0502
NODDeveloping tillers at six leaf stage, 3rd internode18.752323.246437.262680.0233
CAR5Developing grain, bracts removed (5 DPA)17.847414.865517.365513.8714
CAR15Developing grain, bracts removed (15 DPA)12.456911.65099.8642722.5528



CDS Structure of MLOC_3448






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3448.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3448.1CUST_11160_PI427708080AvailableAvailablecontig_130905 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g15700.1 -1 8e-164 514 286/343 (83%) 13106.m01735 protein expressed protein
TAIR PP10 AT3G19190.1 -1 9e-81 278 158/288 (55%) | Symbols: ATATG2, ATG2 | autophagy 2 | chr3:6639879-6648274 FORWARD LENGTH=1839