MLOC_34456 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5327330.5910950.979970.772173
LEAShoots from the seedlings (10 cm shoot stage)10.617425.128337.216721.1519
INF1Young developing inflorescences (5mm)0.2891580.3464830.402570.33827
INF2Developing inflorescences (1-1.5 cm)0.4723570.9216820.5172930.845067
ROORoots from the seedlings (10 cm shoot stage)0.1637030.478780.3590220.545098
NODDeveloping tillers at six leaf stage, 3rd internode3.188115.069379.2667917.1195
CAR5Developing grain, bracts removed (5 DPA)0.2775540.3315150.1970840.310854
CAR15Developing grain, bracts removed (15 DPA)0.02178220.02637930.06420180.127259



CDS Structure of MLOC_34456






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34456.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360598NoneNoneNoneNone
MLOC_34456.1CUST_2169_PI427708080AvailableAvailablecontig_243953 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g56370.1 +1 8e-173 492 265/309 (86%) 13103.m06148 protein methyltransferase, putative, expressed
TAIR PP10 AT5G42760.1 +1 6e-106 321 173/308 (56%) Leucine carboxyl methyltransferase | chr5:17148953-17150105 FORWARD LENGTH=348