MLOC_34425 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains39.878733.012240.721937.244
LEAShoots from the seedlings (10 cm shoot stage)35.469172.00184.49154.4702
INF1Young developing inflorescences (5mm)5.916456.939946.950575.78053
INF2Developing inflorescences (1-1.5 cm)4.059483.900895.102844.78333
ROORoots from the seedlings (10 cm shoot stage)64.306139.611839.167152.5737
NODDeveloping tillers at six leaf stage, 3rd internode2.670682.84987.1882312.0743
CAR5Developing grain, bracts removed (5 DPA)9.2026912.752210.419311.1591
CAR15Developing grain, bracts removed (15 DPA)5.570315.417653.6320412.4338



CDS Structure of MLOC_34425






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34425.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248301.1NoneNoneNoneNone
MLOC_34425.1CUST_2165_PI427708080AvailableAvailablecontig_243847 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g33100.1 -3 4e-144 415 197/240 (82%) 13105.m03416 protein endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
TAIR PP10 AT3G23600.1 -3 1e-100 303 144/235 (61%) alpha/beta-Hydrolases superfamily protein | chr3:8473833-8475655 FORWARD LENGTH=239