MLOC_34374 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains58.317164.719455.132864.7178
LEAShoots from the seedlings (10 cm shoot stage)45.357135.330829.995833.3873
INF1Young developing inflorescences (5mm)112.497111.061116.923100.174
INF2Developing inflorescences (1-1.5 cm)119.023117.348109.22131.521
ROORoots from the seedlings (10 cm shoot stage)42.025162.427250.299376.3283
NODDeveloping tillers at six leaf stage, 3rd internode8.2681115.042349.992773.7139
CAR5Developing grain, bracts removed (5 DPA)89.728486.445789.108790.2905
CAR15Developing grain, bracts removed (15 DPA)37.075735.859729.741284.0647



CDS Structure of MLOC_34374






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34374.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367557NoneNoneNoneNone
MLOC_34374.2CUST_2162_PI427708080AvailableAvailablecontig_243680 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g42560.1 +2 0.0 1258 632/676 (93%) 13108.m04592 protein tRNA synthetase class II core domain containing protein, expressed
TAIR PP10 AT1G29880.1 +2 0.0 1055 521/672 (78%) glycyl-tRNA synthetase / glycine--tRNA ligase | chr1:10459662-10462781 REVERSE LENGTH=729