- Predicted Gene MLOC_34316
MLOC_34316 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 5.81383 | 5.70044 | 5.55495 | 6.80495 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 3.51953 | 5.93738 | 5.1813 | 4.82349 |
| INF1 | Young developing inflorescences (5mm) | 2.11731 | 3.4819 | 3.08681 | 2.95654 |
| INF2 | Developing inflorescences (1-1.5 cm) | 6.0008 | 4.55517 | 5.28741 | 6.55781 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 28.8183 | 22.7521 | 38.9793 | 36.9526 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 7.65533 | 5.78497 | 6.95554 | 21.2059 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 7.4104 | 6.87933 | 8.51216 | 8.91299 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 12.8345 | 11.8441 | 9.73119 | 32.0381 |
CDS Structure of MLOC_34316
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_34316.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os10g30850.2 |
+1 |
7e-131 |
379 |
196/235 (83%) |
13110.m02665 protein zinc finger, RING-type, putative, expressed |
| TAIR PP10 |
AT5G01520.1 |
+1 |
5e-83 |
256 |
114/223 (51%) |
RING/U-box superfamily protein | chr5:206797-208399 FORWARD LENGTH=242 |
