MLOC_34223 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5159861.025460.4764671.49963
LEAShoots from the seedlings (10 cm shoot stage)43.961165.965526.823260.9727
INF1Young developing inflorescences (5mm)0.472250.4538040.1938690.541439
INF2Developing inflorescences (1-1.5 cm)0.2143780.1994940.1496780.305344
ROORoots from the seedlings (10 cm shoot stage)0.2843450.1536261.099311.00274
NODDeveloping tillers at six leaf stage, 3rd internode4.307221.456150.87341110.1354
CAR5Developing grain, bracts removed (5 DPA)2.082951.356863.584572.60503
CAR15Developing grain, bracts removed (15 DPA)00.6958480.5139760.940653



CDS Structure of MLOC_34223






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34223.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_34223.1CUST_11131_PI427708080AvailableAvailablecontig_2429370 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g16876.1 -1 5e-33 118 61/62 (98%) 13104.m11745 protein photosystem II reaction center protein Z, putative
TAIR PP10 ATCG00300.1 -1 7e-31 112 56/62 (90%) | Symbols: YCF9 | YCF9 | chrC:35751-35939 FORWARD LENGTH=62