MLOC_34004 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains95.9713106.64692.9801111.551
LEAShoots from the seedlings (10 cm shoot stage)53.889423.21723.955831.5192
INF1Young developing inflorescences (5mm)294.181277.256249.11248.417
INF2Developing inflorescences (1-1.5 cm)200.868208.632194.406242.163
ROORoots from the seedlings (10 cm shoot stage)38.950290.432582.5965118.491
NODDeveloping tillers at six leaf stage, 3rd internode1.163391.12173.623136.05968
CAR5Developing grain, bracts removed (5 DPA)102.40996.508298.2965108.001
CAR15Developing grain, bracts removed (15 DPA)17.878414.722215.636839.6353



CDS Structure of MLOC_34004






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_34004.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369454NoneNoneNoneNone
MLOC_34004.1CUST_2150_PI427708080AvailableAvailablecontig_241979 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g22880.1 -3 0.0 788 430/533 (81%) 13103.m02766 protein nucleolar protein 5A, putative, expressed
TAIR PP10 AT3G12860.1 -3 0.0 688 341/446 (76%) NOP56-like pre RNA processing ribonucleoprotein | chr3:4091678-4093921 FORWARD LENGTH=499