MLOC_33876 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains28.416333.218631.459334.8082
LEAShoots from the seedlings (10 cm shoot stage)14.00621.268271.033894.74799
INF1Young developing inflorescences (5mm)82.644566.377345.03459.6197
INF2Developing inflorescences (1-1.5 cm)54.784674.596657.290677.1264
ROORoots from the seedlings (10 cm shoot stage)10.018424.338621.826629.5344
NODDeveloping tillers at six leaf stage, 3rd internode0.1847620.1623530.08735430.532362
CAR5Developing grain, bracts removed (5 DPA)50.479247.5739.944149.8597
CAR15Developing grain, bracts removed (15 DPA)3.848972.973722.913588.26606



CDS Structure of MLOC_33876






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33876.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249818.1NoneNoneNoneNone
MLOC_33876.4CUST_2148_PI427708080AvailableAvailablecontig_241088 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g11540.1 -3 0.0 947 497/623 (80%) 13103.m01302 protein RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed
TAIR PP10 AT5G61000.1 -3 0.0 764 397/619 (64%) | Symbols: RPA70D, ATRPA70D | Replication factor-A protein 1-related | chr5:24549682-24552641 REVERSE LENGTH=629