MLOC_33864 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains55.345447.471249.267540.2495
LEAShoots from the seedlings (10 cm shoot stage)31.790229.28230.454621.5856
INF1Young developing inflorescences (5mm)15.398414.933414.64569.89282
INF2Developing inflorescences (1-1.5 cm)10.899612.08819.9877610.3626
ROORoots from the seedlings (10 cm shoot stage)24.716326.566631.357326.3292
NODDeveloping tillers at six leaf stage, 3rd internode42.88436.297226.982895.8573
CAR5Developing grain, bracts removed (5 DPA)19.458222.366922.719517.0238
CAR15Developing grain, bracts removed (15 DPA)5.784564.375034.303229.08074



CDS Structure of MLOC_33864






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33864.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_33864.1CUST_12120_PI427708083AvailableAvailablecontig_241 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g40470.1 +2 3e-22 94 46/55 (84%) 13101.m04144 protein vacuolar ATP synthase subunit d, putative, expressed
TAIR PP10 AT3G28715.2 +2 2e-21 91 43/55 (78%) ATPase, V0/A0 complex, subunit C/D | chr3:10778025-10780350 FORWARD LENGTH=343