MLOC_3382 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.75175502.51967
LEAShoots from the seedlings (10 cm shoot stage)1.377880.69831501.5429
INF1Young developing inflorescences (5mm)0.7475340.37124500.697846
INF2Developing inflorescences (1-1.5 cm)3.648610.81840.7940532.35554
ROORoots from the seedlings (10 cm shoot stage)001.277840.453376
NODDeveloping tillers at six leaf stage, 3rd internode00.6140850.3117773.53362
CAR5Developing grain, bracts removed (5 DPA)00.34256601.01499
CAR15Developing grain, bracts removed (15 DPA)0.341178001.2531



CDS Structure of MLOC_3382






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3382.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3382.1NoneAvailableAvailablecontig_1304004 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g12880.1 +2 5e-25 97 42/69 (61%) 13107.m01338 protein transposon protein, putative, Pong sub-class
TAIR PP10 AT2G13770.1 +2 2e-19 80 38/69 (55%) CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343