MLOC_3382 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_3382_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_3382_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0 | 0.751755 | 0 | 2.51967 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.37788 | 0.698315 | 0 | 1.5429 |
INF1 | Young developing inflorescences (5mm) | 0.747534 | 0.371245 | 0 | 0.697846 |
INF2 | Developing inflorescences (1-1.5 cm) | 3.64861 | 0.8184 | 0.794053 | 2.35554 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0 | 1.27784 | 0.453376 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0.614085 | 0.311777 | 3.53362 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0 | 0.342566 | 0 | 1.01499 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.341178 | 0 | 0 | 1.2531 |
CDS Structure of MLOC_3382
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_3382.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g12880.1 |
+2 |
5e-25 |
97 |
42/69 (61%) |
13107.m01338 protein transposon protein, putative, Pong sub-class |
TAIR PP10 |
AT2G13770.1 |
+2 |
2e-19 |
80 |
38/69 (55%) |
CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343 |