MLOC_33635 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.99523.117064.895846.38047
LEAShoots from the seedlings (10 cm shoot stage)2.795771.063331.081251.66714
INF1Young developing inflorescences (5mm)10.07710.445710.840614.8563
INF2Developing inflorescences (1-1.5 cm)7.511558.9913811.735917.3136
ROORoots from the seedlings (10 cm shoot stage)3.427541.460133.310743.90974
NODDeveloping tillers at six leaf stage, 3rd internode0.1484720.6006211.164322.31919
CAR5Developing grain, bracts removed (5 DPA)3.740164.059494.604056.57439
CAR15Developing grain, bracts removed (15 DPA)0.7907570.6293070.460912.12394



CDS Structure of MLOC_33635






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33635.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_33635.1CUST_12114_PI427708083AvailableAvailablecontig_2391249 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17100.1 +1 2e-32 115 73/85 (86%) 13103.m02043 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G02560.1 +1 6e-31 111 71/85 (84%) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153