MLOC_3356 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.145931.062071.45551.14519
LEAShoots from the seedlings (10 cm shoot stage)0.6100310.6102150.2885330.410736
INF1Young developing inflorescences (5mm)0.1193590.1379660.09668410.0995433
INF2Developing inflorescences (1-1.5 cm)0.06386380.04605540.08564630.0622948
ROORoots from the seedlings (10 cm shoot stage)2.810932.441583.235682.98059
NODDeveloping tillers at six leaf stage, 3rd internode4.960436.1597912.666422.3532
CAR5Developing grain, bracts removed (5 DPA)0.6372070.5130910.454740.498084
CAR15Developing grain, bracts removed (15 DPA)0.1398630.1860640.1060180.362403



CDS Structure of MLOC_3356






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3356.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365124NoneNoneNoneNone
MLOC_3356.3CUST_18_PI427708083AvailableAvailablecontig_130084 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g53850.1 -2 9e-142 438 216/324 (67%) 13104.m05558 protein leucoanthocyanidin reductase, putative, expressed
TAIR PP10 AT1G61720.1 -2 1e-91 301 149/311 (48%) | Symbols: BAN | NAD(P)-binding Rossmann-fold superfamily protein | chr1:22791326-22792757 REVERSE LENGTH=340