MLOC_3355 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.298980.5540780.218240.813408
LEAShoots from the seedlings (10 cm shoot stage)0.3123880.4097840.3221480.248934
INF1Young developing inflorescences (5mm)0.2609350.2711060.2710980.241021
INF2Developing inflorescences (1-1.5 cm)0.1473040.08535060.1947670.149854
ROORoots from the seedlings (10 cm shoot stage)3.742151.059110.552321.28518
NODDeveloping tillers at six leaf stage, 3rd internode1.087972.606993.101952.57986
CAR5Developing grain, bracts removed (5 DPA)0.2461410.08793480.2708350.283607
CAR15Developing grain, bracts removed (15 DPA)0.0080324100.03365540



CDS Structure of MLOC_3355






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3355.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3355.3CUST_11075_PI427708080AvailableAvailablecontig_130084 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g43080.1 +3 2e-92 290 171/278 (62%) 13101.m04442 protein exonuclease, putative, expressed
TAIR PP10 AT3G15140.1 +3 7e-13 70 55/207 (27%) Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:5099712-5101717 REVERSE LENGTH=337