MLOC_33460 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains39.699128.685844.383336.2238
LEAShoots from the seedlings (10 cm shoot stage)30.043520.419622.420520.9758
INF1Young developing inflorescences (5mm)46.150646.293546.306141.2493
INF2Developing inflorescences (1-1.5 cm)31.56949.891446.665549.4127
ROORoots from the seedlings (10 cm shoot stage)30.28136.814843.887443.7787
NODDeveloping tillers at six leaf stage, 3rd internode33.095122.102613.705357.5262
CAR5Developing grain, bracts removed (5 DPA)69.518361.508386.336174.4673
CAR15Developing grain, bracts removed (15 DPA)22.19218.844421.251752.4494



CDS Structure of MLOC_33460






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33460.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_33460.1NoneAvailableAvailablecontig_237534 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g21970.1 -1 6e-64 208 106/112 (95%) 13102.m02462 protein 26S protease regulatory subunit 6B, putative, expressed
TAIR PP10 AT5G58290.1 -1 2e-60 197 101/114 (89%) | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408