MLOC_33439 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9691930.933660.8504430.961103
LEAShoots from the seedlings (10 cm shoot stage)2.22740.4066110.9250260.977183
INF1Young developing inflorescences (5mm)1.525711.389830.827611.18145
INF2Developing inflorescences (1-1.5 cm)1.693422.222612.34722.58337
ROORoots from the seedlings (10 cm shoot stage)2.248633.119083.915893.74886
NODDeveloping tillers at six leaf stage, 3rd internode7.454676.600151.9449615.9362
CAR5Developing grain, bracts removed (5 DPA)3.249172.457692.504072.98013
CAR15Developing grain, bracts removed (15 DPA)0.07693470.03002090.09204490.168262



CDS Structure of MLOC_33439






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33439.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361214NoneNoneNoneNone
MLOC_33439.1CUST_2142_PI427708080AvailableAvailablecontig_237375 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g57800.1 +3 0.0 550 371/575 (65%) 13104.m06062 protein BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
TAIR PP10 AT3G19850.1 +3 7e-96 312 219/552 (40%) Phototropic-responsive NPH3 family protein | chr3:6898383-6901157 REVERSE LENGTH=554