MLOC_33416 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.290713.867512.517314.9915
LEAShoots from the seedlings (10 cm shoot stage)15.12654.172384.545297.26102
INF1Young developing inflorescences (5mm)12.25112.207816.343513.2312
INF2Developing inflorescences (1-1.5 cm)13.095313.929214.764717.9455
ROORoots from the seedlings (10 cm shoot stage)18.530815.192114.153120.5071
NODDeveloping tillers at six leaf stage, 3rd internode44.507749.918762.956185.544
CAR5Developing grain, bracts removed (5 DPA)10.128511.33189.6529311.9859
CAR15Developing grain, bracts removed (15 DPA)1.594211.261110.8375173.59832



CDS Structure of MLOC_33416






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33416.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_33416.1CUST_11050_PI427708080AvailableAvailablecontig_237140 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g64920.1 +2 5e-76 233 118/123 (96%) 13101.m07004 protein nuclear matrix protein 1, putative, expressed
TAIR PP10 AT5G17620.1 +2 3e-57 183 88/123 (72%) CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5805934-5808455 REVERSE LENGTH=329