- Predicted Gene MLOC_33416
MLOC_33416 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_33416_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 11.2907 | 13.8675 | 12.5173 | 14.9915 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 15.1265 | 4.17238 | 4.54529 | 7.26102 |
INF1 | Young developing inflorescences (5mm) | 12.251 | 12.2078 | 16.3435 | 13.2312 |
INF2 | Developing inflorescences (1-1.5 cm) | 13.0953 | 13.9292 | 14.7647 | 17.9455 |
ROO | Roots from the seedlings (10 cm shoot stage) | 18.5308 | 15.1921 | 14.1531 | 20.5071 |
NOD | Developing tillers at six leaf stage, 3rd internode | 44.5077 | 49.9187 | 62.956 | 185.544 |
CAR5 | Developing grain, bracts removed (5 DPA) | 10.1285 | 11.3318 | 9.65293 | 11.9859 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.59421 | 1.26111 | 0.837517 | 3.59832 |
CDS Structure of MLOC_33416
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_33416.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g64920.1 |
+2 |
5e-76 |
233 |
118/123 (96%) |
13101.m07004 protein nuclear matrix protein 1, putative, expressed |
TAIR PP10 |
AT5G17620.1 |
+2 |
3e-57 |
183 |
88/123 (72%) |
CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5805934-5808455 REVERSE LENGTH=329 |