MLOC_3335 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.6138117.890715.841615.6855
LEAShoots from the seedlings (10 cm shoot stage)12.955218.781613.845613.9301
INF1Young developing inflorescences (5mm)30.750829.168824.475323.9429
INF2Developing inflorescences (1-1.5 cm)34.435737.693735.053640.607
ROORoots from the seedlings (10 cm shoot stage)7.1129215.067512.581418.7487
NODDeveloping tillers at six leaf stage, 3rd internode6.054456.564198.7739827.1485
CAR5Developing grain, bracts removed (5 DPA)40.638139.644742.838842.1027
CAR15Developing grain, bracts removed (15 DPA)5.381956.675165.9443513.325



CDS Structure of MLOC_3335






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3335.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3335.2CUST_11041_PI427708080AvailableAvailablecontig_129847 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g39550.2 -1 0.0 1036 664/755 (88%) 13102.m04378 protein calcium-binding mitochondrial protein anon-60Da, putative, expressed
TAIR PP10 AT1G65540.1 -1 0.0 742 491/756 (65%) LETM1-like protein | chr1:24362382-24366011 REVERSE LENGTH=736