MLOC_3334 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.062896.684255.293565.32197
LEAShoots from the seedlings (10 cm shoot stage)6.949527.397747.088585.86737
INF1Young developing inflorescences (5mm)12.985814.126413.228810.4543
INF2Developing inflorescences (1-1.5 cm)14.862418.121817.138716.9464
ROORoots from the seedlings (10 cm shoot stage)3.316267.039724.321587.07858
NODDeveloping tillers at six leaf stage, 3rd internode3.437164.422284.787814.4358
CAR5Developing grain, bracts removed (5 DPA)9.393287.912688.962087.78235
CAR15Developing grain, bracts removed (15 DPA)6.545116.504446.0441213.355



CDS Structure of MLOC_3334






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3334.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375756NoneNoneNoneNone
MLOC_3334.1CUST_139_PI427708080AvailableAvailablecontig_129847 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g39540.2 +1 0.0 1360 678/790 (86%) 13102.m04375 protein transposon protein, putative, unclassified, expressed
TAIR PP10 AT1G52520.1 +1 9e-126 403 235/620 (38%) | Symbols: FRS6 | FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703