MLOC_33258 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.66673.045713.284682.87487
LEAShoots from the seedlings (10 cm shoot stage)7.815138.481326.689467.06651
INF1Young developing inflorescences (5mm)5.961995.525829.388235.73546
INF2Developing inflorescences (1-1.5 cm)10.85578.057819.5341710.5304
ROORoots from the seedlings (10 cm shoot stage)0.8594162.526091.735822.99171
NODDeveloping tillers at six leaf stage, 3rd internode6.022077.155710.360228.9866
CAR5Developing grain, bracts removed (5 DPA)5.347224.179574.668084.76899
CAR15Developing grain, bracts removed (15 DPA)1.507671.739131.205523.58142



CDS Structure of MLOC_33258






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33258.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_33258.3CUST_11035_PI427708080AvailableAvailablecontig_235775 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g46900.1 +1 9e-85 260 125/288 (43%) 13107.m04970 protein transposon protein, putative, unclassified, expressed
TAIR PP10 AT4G38180.1 +1 1e-29 126 75/286 (26%) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788