MLOC_33252 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.0248210.40365.761088.18683
LEAShoots from the seedlings (10 cm shoot stage)10.700718.239621.337514.9795
INF1Young developing inflorescences (5mm)10.060717.042716.62311.7204
INF2Developing inflorescences (1-1.5 cm)21.362221.26622.039224.5724
ROORoots from the seedlings (10 cm shoot stage)6.7784614.93747.0571615.3743
NODDeveloping tillers at six leaf stage, 3rd internode10.08618.4160610.739229.4869
CAR5Developing grain, bracts removed (5 DPA)10.79766.421875.044167.73131
CAR15Developing grain, bracts removed (15 DPA)1.703841.807123.11765.14156



CDS Structure of MLOC_33252






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33252.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_33252.1CUST_4700_PI427708083AvailableAvailablecontig_2357310 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g31460.1 -2 4e-37 132 62/81 (77%) 13108.m03262 protein GTPase of unknown function domain containing protein, putative, expressed
TAIR PP10 AT1G78010.1 -2 1e-20 86 44/81 (54%) tRNA modification GTPase, putative | chr1:29333535-29336297 FORWARD LENGTH=560