MLOC_33219 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains33.609824.620722.542725.5569
LEAShoots from the seedlings (10 cm shoot stage)5.2078512.40347.49636.26469
INF1Young developing inflorescences (5mm)0.03240210.3533822.50280.895829
INF2Developing inflorescences (1-1.5 cm)0.068905000.0865672
ROORoots from the seedlings (10 cm shoot stage)18.589215.267225.516117.7257
NODDeveloping tillers at six leaf stage, 3rd internode0.3804620.1507830.2383520.360679
CAR5Developing grain, bracts removed (5 DPA)3.220782.329541.999542.58367
CAR15Developing grain, bracts removed (15 DPA)1.042170.9802380.9239142.60008



CDS Structure of MLOC_33219






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33219.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368782NoneNoneNoneNone
MLOC_33219.1CUST_17986_PI427708080AvailableAvailablecontig_235453 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g33710.1 +1 7e-121 354 157/200 (79%) 13108.m03517 protein ribonuclease T2 family domain containing protein, expressed
TAIR PP10 AT2G02990.1 +1 1e-93 283 120/199 (60%) | Symbols: RNS1, ATRNS1 | ribonuclease 1 | chr2:873714-874667 FORWARD LENGTH=230