morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_33153

Gene IDMLOC_33153
Source Contig contig_2348720

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_33153 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	2.20918	1.85499	1.44811	0
LEA	Shoots from the seedlings (10 cm shoot stage)	5.05488	0	1.48657	0
INF1	Young developing inflorescences (5mm)	5.55337	1.84834	5.78258	0
INF2	Developing inflorescences (1-1.5 cm)	8.88252	13.1395	5.6383	0
ROO	Roots from the seedlings (10 cm shoot stage)	3.87312	2.89534	0	0
NOD	Developing tillers at six leaf stage, 3rd internode	0	2.46439	1.52633	0
CAR5	Developing grain, bracts removed (5 DPA)	4.50501	3.21837	6.80341	0
CAR15	Developing grain, bracts removed (15 DPA)	3.53943	0	0	0

CDS Structure of MLOC_33153

Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK363837

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK363837	None	None	None	None
MLOC_25629.1	None	Available	None	contig_170373 (Mapped)
MLOC_25915.1	None	Available	None	contig_172141 (Mapped)
MLOC_26342.1	None	Available	None	contig_1750031 (Not mapped)
MLOC_29724.1	None	Available	None	contig_2031206 (Not mapped)
MLOC_31920.1	None	Available	None	contig_2235192 (Not mapped)
MLOC_33153.1	None	Available	None	contig_2348720 (Mapped)
MLOC_47521.1	None	Available	None	contig_307394 (Not mapped)
MLOC_48332.1	None	Available	None	contig_321541 (Not mapped)
MLOC_48596.1	None	Available	None	contig_326472 (Mapped)
MLOC_48717.1	None	Available	Available	contig_328372 (Not mapped)
MLOC_53019.1	None	Available	None	contig_379933 (Mapped)
MLOC_6984.1	None	Available	None	contig_1384356 (Not mapped)
MLOC_77072.1	None	Available	None	contig_741794 (Not mapped)
MLOC_783.1	None	Available	None	contig_1060363 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-