MLOC_33074 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.40623.576919.75618.4612
LEAShoots from the seedlings (10 cm shoot stage)11.84612.15811.14648.95698
INF1Young developing inflorescences (5mm)14.642113.025814.163911.2453
INF2Developing inflorescences (1-1.5 cm)17.366215.238214.940716.5949
ROORoots from the seedlings (10 cm shoot stage)9.3355210.569110.157710.9086
NODDeveloping tillers at six leaf stage, 3rd internode11.7885.303074.8931414.5278
CAR5Developing grain, bracts removed (5 DPA)15.096414.533314.030713.4606
CAR15Developing grain, bracts removed (15 DPA)6.941495.088676.0497814.3195



CDS Structure of MLOC_33074






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33074.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_33074.2CUST_17636_PI427708080AvailableAvailablecontig_234251 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g42000.1 +3 1e-31 122 69/88 (78%) 13104.m04132 protein 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed
TAIR PP10 AT2G44050.1 +3 6e-14 71 42/82 (51%) | Symbols: COS1 | 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase | chr2:18224304-18225917 FORWARD LENGTH=227