MLOC_33003 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains46.062433.502336.431134.3713
LEAShoots from the seedlings (10 cm shoot stage)35.395940.471343.540430.3575
INF1Young developing inflorescences (5mm)41.73142.342347.43132.8796
INF2Developing inflorescences (1-1.5 cm)54.689845.550349.133249.7105
ROORoots from the seedlings (10 cm shoot stage)56.309539.306934.451144.5642
NODDeveloping tillers at six leaf stage, 3rd internode31.446440.424141.8512107.967
CAR5Developing grain, bracts removed (5 DPA)29.546829.094632.981126.9257
CAR15Developing grain, bracts removed (15 DPA)15.890415.946316.5533.0907



CDS Structure of MLOC_33003






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_33003.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250435.1NoneNoneNoneNone
MLOC_33003.1CUST_2135_PI427708080AvailableAvailablecontig_233670 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g51140.1 -1 1e-63 214 135/291 (46%) 13102.m05811 protein N-rich protein, putative, expressed
TAIR PP10 AT2G32910.1 -1 3e-12 68 59/195 (30%) DCD (Development and Cell Death) domain protein | chr2:13959685-13961989 FORWARD LENGTH=691