MLOC_32982 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8167731.327161.580780.946834
LEAShoots from the seedlings (10 cm shoot stage)2.250422.600261.93481.67032
INF1Young developing inflorescences (5mm)3.350682.745283.430132.01124
INF2Developing inflorescences (1-1.5 cm)5.565634.430314.140184.39908
ROORoots from the seedlings (10 cm shoot stage)1.317370.6412291.574450.899869
NODDeveloping tillers at six leaf stage, 3rd internode2.257842.761734.845699.34324
CAR5Developing grain, bracts removed (5 DPA)2.303532.139232.620851.81068
CAR15Developing grain, bracts removed (15 DPA)1.082730.8676651.186181.82541



CDS Structure of MLOC_32982






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32982.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_32982.1CUST_12095_PI427708083AvailableAvailablecontig_233538 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g43140.1 +1 2e-36 144 97/202 (48%) 13104.m04275 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT3G16840.1 +1 7e-16 80 55/178 (31%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5738020-5743042 REVERSE LENGTH=826