MLOC_32906 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.083238600.140606
LEAShoots from the seedlings (10 cm shoot stage)0.5265710.30555600.343303
INF1Young developing inflorescences (5mm)0.1337650.07497920.4961640.197938
INF2Developing inflorescences (1-1.5 cm)0.2572720.1226680.3151790.268199
ROORoots from the seedlings (10 cm shoot stage)0.17323600.4626330.13301
NODDeveloping tillers at six leaf stage, 3rd internode0.05670910.1080850.02154040.236873
CAR5Developing grain, bracts removed (5 DPA)0.3241880.2265740.2418330.245266
CAR15Developing grain, bracts removed (15 DPA)00.1469230.09470950.379978



CDS Structure of MLOC_32906






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32906.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_32906.1CUST_11006_PI427708080AvailableAvailablecontig_232880 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g36510.1 -1 1e-47 171 88/195 (45%) 13111.m03577 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT3G24255.1 -1 2e-12 67 32/97 (33%) RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr3:8789471-8793208 FORWARD LENGTH=746