MLOC_32712 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4490570.537130.8052150.617685
LEAShoots from the seedlings (10 cm shoot stage)1.432390.2781740.2798040.544075
INF1Young developing inflorescences (5mm)1.756641.992154.307672.51254
INF2Developing inflorescences (1-1.5 cm)1.363080.7043772.989581.73916
ROORoots from the seedlings (10 cm shoot stage)2.624492.969536.978553.91842
NODDeveloping tillers at six leaf stage, 3rd internode10.51997.126497.9758918.8188
CAR5Developing grain, bracts removed (5 DPA)0.07714390.072059200.0812089
CAR15Developing grain, bracts removed (15 DPA)00.061885400.223225



CDS Structure of MLOC_32712






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32712.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_32712.1CUST_10987_PI427708080AvailableAvailablecontig_231380 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g38110.1 -1 1e-62 198 109/153 (71%) 13109.m03792 protein RING-H2 finger protein, putative, expressed
TAIR PP10 AT2G17450.1 -1 3e-35 126 62/126 (49%) | Symbols: RHA3A | RING-H2 finger A3A | chr2:7576640-7577197 REVERSE LENGTH=185