MLOC_32710 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains51.931543.35551.623643.8676
LEAShoots from the seedlings (10 cm shoot stage)41.467745.385241.76333.0114
INF1Young developing inflorescences (5mm)35.564748.12447.533332.8945
INF2Developing inflorescences (1-1.5 cm)33.369929.136829.04630.8628
ROORoots from the seedlings (10 cm shoot stage)30.431634.988636.829636.4795
NODDeveloping tillers at six leaf stage, 3rd internode80.453572.682475.3911209.761
CAR5Developing grain, bracts removed (5 DPA)42.356345.82447.931540.1111
CAR15Developing grain, bracts removed (15 DPA)32.656130.007135.102369.5328



CDS Structure of MLOC_32710






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32710.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356514NoneNoneNoneNone
MLOC_32710.2CUST_2131_PI427708080AvailableAvailablecontig_231362 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g09080.1 +1 0.0 662 335/366 (92%) 13103.m01049 protein ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
TAIR PP10 AT4G39910.1 +1 0.0 602 305/370 (82%) | Symbols: ATUBP3, UBP3 | ubiquitin-specific protease 3 | chr4:18511858-18514139 REVERSE LENGTH=371