MLOC_32635 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.4237914.996917.247416.0263
LEAShoots from the seedlings (10 cm shoot stage)11.52032.57736.519965.68867
INF1Young developing inflorescences (5mm)15.473612.231810.983112.8516
INF2Developing inflorescences (1-1.5 cm)7.820088.801239.1844811.295
ROORoots from the seedlings (10 cm shoot stage)1.74429.139668.0445911.0711
NODDeveloping tillers at six leaf stage, 3rd internode1.690520.5333430.1112061.16404
CAR5Developing grain, bracts removed (5 DPA)7.436828.585498.483629.79399
CAR15Developing grain, bracts removed (15 DPA)0.9345640.7661391.159022.70462



CDS Structure of MLOC_32635






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32635.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_32635.1CUST_12085_PI427708083AvailableAvailablecontig_23048 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g01340.3 +2 1e-19 83 39/48 (81%) 13111.m00042 protein omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
TAIR PP10 AT2G29980.2 +2 1e-11 60 25/40 (63%) | Symbols: FAD3 | fatty acid desaturase 3 | chr2:12782257-12784946 REVERSE LENGTH=288