MLOC_32563 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)54.382431.535389.216546.7255
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.494405000.248265
NODDeveloping tillers at six leaf stage, 3rd internode16.084411.303927.482239.7342
CAR5Developing grain, bracts removed (5 DPA)000.2498040.206923
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_32563






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_32563.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_32563.1CUST_4620_PI427708083AvailableAvailablecontig_2297759 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g41710.1 -3 2e-31 114 53/55 (96%) 13101.m04278 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT2G34420.1 -3 8e-32 114 53/55 (96%) | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265