MLOC_3236 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.377513.385811.054615.438
LEAShoots from the seedlings (10 cm shoot stage)00.045275500.0418184
INF1Young developing inflorescences (5mm)0.018415000.016566
INF2Developing inflorescences (1-1.5 cm)00.019065900.037148
ROORoots from the seedlings (10 cm shoot stage)13.49958.221776.1186510.0194
NODDeveloping tillers at six leaf stage, 3rd internode000.01307350.0347857
CAR5Developing grain, bracts removed (5 DPA)00.023059900.0339785
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_3236






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3236.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3236.1CUST_10954_PI427708080AvailableAvailablecontig_128965 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46520.1 -3 2e-162 475 253/419 (60%) 13105.m04970 protein polygalacturonase, putative, expressed
TAIR PP10 AT1G80170.1 -3 1e-80 263 148/393 (38%) Pectin lyase-like superfamily protein | chr1:30153646-30155683 REVERSE LENGTH=444